Variant report

Variant	rs72709635
Chromosome Location	chr9:33522676-33522677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3814514	1.00[ASN][1000 genomes]
rs3860990	0.83[EUR][1000 genomes]
rs56108788	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57867764	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022355	0.98[EUR][1000 genomes]
rs72709612	0.82[EUR][1000 genomes]
rs72709613	0.83[EUR][1000 genomes]
rs72709621	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72709624	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72709629	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72709632	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024207	chr9:33296368-33574892	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv427840	chr9:33495185-33989975	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv982208	chr9:33516497-33614296	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:33511400-33523400	Weak transcription	Right Ventricle	heart
2	chr9:33512000-33523200	Weak transcription	HUVEC	blood vessel
3	chr9:33512200-33523200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:33513800-33523400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:33515200-33523200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:33517400-33523400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:33518000-33523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:33518600-33523400	Weak transcription	NHLF	lung
9	chr9:33518800-33523000	Weak transcription	Hela-S3	cervix
10	chr9:33519000-33523200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:33521800-33523400	Enhancers	NHEK	skin
12	chr9:33522000-33522800	Weak transcription	A549	lung
13	chr9:33522000-33523200	Enhancers	HSMM	muscle
14	chr9:33522200-33523200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:33522200-33523400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:33522400-33523400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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