Variant report

Variant	rs72709937
Chromosome Location	chr4:86259250-86259251
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86258169..86261616-chr4:86269942..86273254,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13106784	1.00[ASN][1000 genomes]
rs13120417	1.00[ASN][1000 genomes]
rs13122214	1.00[ASN][1000 genomes]
rs13133618	1.00[ASN][1000 genomes]
rs13136222	1.00[ASN][1000 genomes]
rs13136871	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142662	1.00[ASN][1000 genomes]
rs16995958	1.00[ASN][1000 genomes]
rs2869276	1.00[ASN][1000 genomes]
rs34609340	1.00[ASN][1000 genomes]
rs34671717	1.00[ASN][1000 genomes]
rs34919300	1.00[ASN][1000 genomes]
rs35217626	1.00[ASN][1000 genomes]
rs35233231	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35503537	1.00[ASN][1000 genomes]
rs35733791	1.00[ASN][1000 genomes]
rs35969548	1.00[ASN][1000 genomes]
rs36102242	1.00[ASN][1000 genomes]
rs4546233	1.00[ASN][1000 genomes]
rs4574399	1.00[ASN][1000 genomes]
rs66473005	1.00[ASN][1000 genomes]
rs66486319	1.00[ASN][1000 genomes]
rs66923696	1.00[ASN][1000 genomes]
rs67727084	1.00[ASN][1000 genomes]
rs67860565	1.00[ASN][1000 genomes]
rs7654135	1.00[ASN][1000 genomes]
rs7654315	1.00[ASN][1000 genomes]
rs7654486	1.00[ASN][1000 genomes]
rs7655243	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv427685	chr4:86032872-86340548	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3331664	chr4:86234879-86421961	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2760861	chr4:86241278-86324115	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86259000-86260000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:86259000-86260000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:86259200-86259800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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