Variant report

Variant	rs72713704
Chromosome Location	chr9:27095308-27095309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10967715	0.90[ASN][1000 genomes]
rs10967716	0.90[ASN][1000 genomes]
rs2782416	0.90[ASN][1000 genomes]
rs3904612	0.90[ASN][1000 genomes]
rs55996435	0.90[ASN][1000 genomes]
rs620090	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs630023	0.90[ASN][1000 genomes]
rs651031	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27091600-27095800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:27093800-27095600	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:27093800-27095800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:27094000-27095400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:27094000-27095800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:27094000-27095800	Enhancers	HSMM	muscle
7	chr9:27094000-27096400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:27094200-27095400	Enhancers	NHEK	skin
9	chr9:27094200-27095600	Enhancers	HUVEC	blood vessel
10	chr9:27094400-27095600	Enhancers	NHDF-Ad	bronchial
11	chr9:27094400-27096400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:27094600-27095400	Enhancers	NHLF	lung
13	chr9:27094800-27096000	Enhancers	Osteobl	bone
14	chr9:27095000-27095600	Enhancers	NH-A	brain
15	chr9:27095000-27096000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:27095000-27096000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:27095000-27096800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:27095200-27095600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:27095200-27098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:27095200-27108800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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