Variant report

Variant	rs72714233
Chromosome Location	chr14:63878982-63878983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63873643..63876759-chr14:63877495..63879586,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3783744	0.82[EUR][1000 genomes]
rs3783745	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72714219	0.81[ASN][1000 genomes]
rs72714220	0.81[ASN][1000 genomes]
rs72714227	0.82[EUR][1000 genomes]
rs72714229	0.82[EUR][1000 genomes]
rs72716308	0.82[EUR][1000 genomes]
rs72716314	0.82[EUR][1000 genomes]
rs73272529	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv832815	chr14:63750058-63913900	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv902018	chr14:63786658-63884984	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63837800-63902200	Weak transcription	Small Intestine	intestine
2	chr14:63843200-63898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:63849000-63888000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:63851200-63886000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:63851200-63902400	Weak transcription	Right Ventricle	heart
6	chr14:63851200-63903600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:63851200-63922000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:63852400-63882200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:63852600-63899000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:63853200-63886600	Weak transcription	NH-A	brain
11	chr14:63854000-63893400	Weak transcription	Fetal Brain Male	brain
12	chr14:63854800-63922400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:63855000-63886000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:63856200-63883000	Weak transcription	K562	blood
15	chr14:63858000-63880600	Weak transcription	Gastric	stomach
16	chr14:63858000-63890200	Weak transcription	Pancreas	Pancrea
17	chr14:63858400-63900000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:63858600-63891400	Weak transcription	Osteobl	bone
19	chr14:63859800-63901600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:63860000-63888000	Weak transcription	HUVEC	blood vessel
21	chr14:63860200-63880400	Weak transcription	Hela-S3	cervix
22	chr14:63860400-63885600	Weak transcription	Fetal Intestine Small	intestine
23	chr14:63862000-63879000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:63862000-63880000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:63862000-63880200	Weak transcription	NHEK	skin
26	chr14:63862000-63902200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:63862200-63897800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:63862200-63902600	Weak transcription	Brain Angular Gyrus	brain
29	chr14:63862200-63903600	Weak transcription	HMEC	breast
30	chr14:63862400-63884800	Weak transcription	Adipose Nuclei	Adipose
31	chr14:63862400-63887800	Weak transcription	Thymus	Thymus
32	chr14:63862400-63894600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:63862600-63880200	Weak transcription	Lung	lung
34	chr14:63863000-63879000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:63863800-63888000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:63864200-63890200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:63865800-63887800	Weak transcription	Fetal Brain Female	brain
38	chr14:63869000-63888800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:63869800-63880000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr14:63870400-63888800	Weak transcription	Psoas Muscle	Psoas
41	chr14:63871800-63880200	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:63871800-63882400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:63871800-63900000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:63872000-63880600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:63872000-63898200	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:63872200-63881600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:63872200-63901200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr14:63872400-63888200	Weak transcription	Brain Anterior Caudate	brain
49	chr14:63872600-63880000	Weak transcription	Brain Germinal Matrix	brain
50	chr14:63872600-63880400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links