Variant report

Variant	rs72714917
Chromosome Location	chr14:104499467-104499468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104497825..104500668-chr3:70209733..70212637,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10132127	0.88[ASN][1000 genomes]
rs10132153	0.87[ASN][1000 genomes]
rs10134394	0.98[ASN][1000 genomes]
rs10135296	0.92[ASN][1000 genomes]
rs10135338	0.98[ASN][1000 genomes]
rs10135507	0.96[ASN][1000 genomes]
rs10137997	0.96[ASN][1000 genomes]
rs10143030	0.84[ASN][1000 genomes]
rs10143389	0.84[ASN][1000 genomes]
rs10144682	0.95[ASN][1000 genomes]
rs10147923	0.83[ASN][1000 genomes]
rs10149233	0.96[ASN][1000 genomes]
rs10149734	0.83[ASN][1000 genomes]
rs10220464	0.81[ASN][1000 genomes]
rs10782497	0.87[ASN][1000 genomes]
rs11160777	0.88[ASN][1000 genomes]
rs11160779	0.93[ASN][1000 genomes]
rs11160780	0.98[ASN][1000 genomes]
rs11847797	0.84[ASN][1000 genomes]
rs11849423	0.92[ASN][1000 genomes]
rs11851097	0.84[ASN][1000 genomes]
rs11851441	0.93[ASN][1000 genomes]
rs11851723	0.93[ASN][1000 genomes]
rs12100528	0.93[ASN][1000 genomes]
rs12147460	0.84[ASN][1000 genomes]
rs12147828	0.93[ASN][1000 genomes]
rs12147936	0.93[ASN][1000 genomes]
rs1957517	0.83[ASN][1000 genomes]
rs1957518	0.84[ASN][1000 genomes]
rs28377615	0.94[ASN][1000 genomes]
rs28391043	0.93[ASN][1000 genomes]
rs28461376	0.81[ASN][1000 genomes]
rs28522352	0.91[ASN][1000 genomes]
rs28574832	0.84[ASN][1000 genomes]
rs28644198	0.94[ASN][1000 genomes]
rs28725314	0.96[ASN][1000 genomes]
rs4900604	0.84[ASN][1000 genomes]
rs4900605	0.83[ASN][1000 genomes]
rs4900608	0.95[ASN][1000 genomes]
rs4906387	0.80[ASN][1000 genomes]
rs4906392	0.84[ASN][1000 genomes]
rs4906396	0.84[ASN][1000 genomes]
rs4906397	0.90[ASN][1000 genomes]
rs4906399	0.93[ASN][1000 genomes]
rs4906401	0.93[ASN][1000 genomes]
rs4906402	0.92[ASN][1000 genomes]
rs4906408	0.95[ASN][1000 genomes]
rs4906409	0.95[ASN][1000 genomes]
rs55938939	0.91[ASN][1000 genomes]
rs58289480	0.85[ASN][1000 genomes]
rs61244535	0.94[ASN][1000 genomes]
rs61248168	0.84[ASN][1000 genomes]
rs61319604	0.93[ASN][1000 genomes]
rs7148877	0.82[ASN][1000 genomes]
rs7158223	0.92[ASN][1000 genomes]
rs72712884	0.84[ASN][1000 genomes]
rs72712889	0.84[ASN][1000 genomes]
rs72712900	0.90[ASN][1000 genomes]
rs72714904	0.91[ASN][1000 genomes]
rs72714909	0.93[ASN][1000 genomes]
rs72714937	0.92[ASN][1000 genomes]
rs8008510	0.81[ASN][1000 genomes]
rs8009349	0.85[ASN][1000 genomes]
rs8010286	0.93[ASN][1000 genomes]
rs8014546	0.88[ASN][1000 genomes]
rs8022833	0.85[ASN][1000 genomes]
rs877009	0.95[ASN][1000 genomes]
rs9285602	0.81[ASN][1000 genomes]
rs9324068	0.81[ASN][1000 genomes]
rs9324069	0.81[ASN][1000 genomes]
rs9944163	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
4	nsv1049690	chr14:104411621-104575838	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv542208	chr14:104411621-104575838	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv526680	chr14:104427043-104568472	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1047990	chr14:104460605-104556463	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv542209	chr14:104497447-104540729	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104492200-104516000	Weak transcription	Spleen	Spleen
2	chr14:104493000-104504000	Weak transcription	Gastric	stomach
3	chr14:104496400-104520800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr14:104499000-104511800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:104499200-104499800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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