Variant report

Variant	rs72716543
Chromosome Location	chr9:73055718-73055719
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72712294	1.00[AFR][1000 genomes]
rs72716533	1.00[AFR][1000 genomes]
rs72718970	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73050400-73056200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:73051000-73056000	Enhancers	HUVEC	blood vessel
3	chr9:73053000-73056000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:73053200-73057600	Enhancers	HepG2	liver
5	chr9:73053600-73071000	Weak transcription	Right Atrium	heart
6	chr9:73053800-73056000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:73053800-73056600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:73054000-73057000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:73054000-73065000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:73054200-73057600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:73054400-73055800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:73054400-73056200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:73054400-73057400	Weak transcription	Left Ventricle	heart
14	chr9:73054400-73066600	Weak transcription	Psoas Muscle	Psoas
15	chr9:73054600-73057600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:73055000-73056000	Enhancers	NHLF	lung
17	chr9:73055200-73055800	Enhancers	Colon Smooth Muscle	Colon
18	chr9:73055600-73056000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links