Variant report

Variant	rs72718397
Chromosome Location	chr8:130970406-130970407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10088317	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092658	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111220	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112738	1.00[ASN][1000 genomes]
rs10481174	1.00[ASN][1000 genomes]
rs16904182	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904183	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17194407	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194571	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194770	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279655	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28411256	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682439	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718400	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720304	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720325	0.84[AMR][1000 genomes]
rs7812685	1.00[ASN][1000 genomes]
rs7817091	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825122	1.00[ASN][1000 genomes]
rs7837729	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1021229	chr8:130887132-131057897	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1017292	chr8:130887132-131107258	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv465808	chr8:130963259-131118658	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv612232	chr8:130963259-131118658	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130952800-130981400	Weak transcription	Left Ventricle	heart
2	chr8:130953000-130980000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:130953200-130974800	Weak transcription	Fetal Brain Female	brain
4	chr8:130953400-130982000	Weak transcription	Hela-S3	cervix
5	chr8:130953600-130975400	Weak transcription	HMEC	breast
6	chr8:130953600-130980000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:130959200-130979400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:130959200-130982200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:130959200-130983400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:130961000-130977200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:130965800-130975000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:130965800-130975000	Weak transcription	Psoas Muscle	Psoas
13	chr8:130965800-130983800	Weak transcription	HSMMtube	muscle
14	chr8:130966000-130970800	Weak transcription	K562	blood
15	chr8:130966000-130971600	Weak transcription	Spleen	Spleen
16	chr8:130966000-130975000	Weak transcription	Gastric	stomach
17	chr8:130966000-130975000	Weak transcription	Pancreas	Pancrea
18	chr8:130966000-130975200	Weak transcription	Lung	lung
19	chr8:130966000-130975200	Weak transcription	Thymus	Thymus
20	chr8:130966000-130975400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:130966000-130975600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:130966000-130976600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:130966000-130981600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:130966000-130984400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:130966000-130984800	Weak transcription	Esophagus	oesophagus
26	chr8:130966200-130971400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:130966200-130981600	Weak transcription	Placenta	Placenta
28	chr8:130966400-130971400	Weak transcription	NHEK	skin
29	chr8:130966400-130974600	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:130966400-130975000	Weak transcription	Brain Angular Gyrus	brain
31	chr8:130966600-130971400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:130966600-130974800	Weak transcription	Brain Substantia Nigra	brain
33	chr8:130967200-130981000	Weak transcription	Fetal Intestine Small	intestine
34	chr8:130968000-130972600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr8:130968200-130973600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr8:130968800-130971400	Enhancers	Primary T cells from cord blood	blood
37	chr8:130968800-130972600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:130968800-130972800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr8:130968800-130972800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:130968800-130973600	Enhancers	Primary T cells fromperipheralblood	blood
41	chr8:130969000-130972400	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr8:130969000-130972600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr8:130969200-130972600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr8:130969200-130975400	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr8:130969400-130972800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr8:130969600-130970600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:130969600-130972200	Enhancers	Primary hematopoietic stem cells	blood
48	chr8:130969800-130972400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr8:130969800-130972600	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr8:130970000-130973400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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