Variant report

Variant	rs72718436
Chromosome Location	chr14:66481748-66481749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr14:66481458-66482550	U2OS	brain:	n/a	n/a
2	KAP1	chr14:66481262-66482658	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
YBX1P1	TF binding region
ENSG00000238876	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10150177	1.00[ASN][1000 genomes]
rs1959361	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28637100	1.00[ASN][1000 genomes]
rs55696951	1.00[ASN][1000 genomes]
rs55764851	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55899836	1.00[AFR][1000 genomes]
rs56362186	1.00[AFR][1000 genomes]
rs56982981	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718442	1.00[ASN][1000 genomes]
rs72718445	1.00[ASN][1000 genomes]
rs72718454	1.00[ASN][1000 genomes]
rs72718456	1.00[ASN][1000 genomes]
rs72718457	1.00[ASN][1000 genomes]
rs72718458	1.00[ASN][1000 genomes]
rs72718460	1.00[ASN][1000 genomes]
rs72718472	1.00[AFR][1000 genomes]
rs72718473	1.00[AFR][1000 genomes]
rs72718474	1.00[AFR][1000 genomes]
rs72718475	1.00[AFR][1000 genomes]
rs72718476	1.00[AFR][1000 genomes]
rs72718477	1.00[AFR][1000 genomes]
rs72718491	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv564953	chr14:66287921-67046960	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv1050485	chr14:66308283-67109270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv530775	chr14:66316836-67079049	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv530793	chr14:66317036-67078908	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv1046455	chr14:66345369-66848234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1043864	chr14:66372458-66845503	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv917338	chr14:66376591-66841403	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66476200-66482200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:66480800-66482600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:66481000-66482000	Bivalent Enhancer	Fetal Kidney	kidney
4	chr14:66481600-66482400	Enhancers	Rectal Mucosa Donor 31	rectum

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