Variant report

Variant	rs72720312
Chromosome Location	chr14:64556271-64556272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10129174	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10136783	0.94[AFR][1000 genomes]
rs10137916	0.97[AFR][1000 genomes]
rs10137972	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10138292	0.89[AFR][1000 genomes]
rs10138308	0.91[AFR][1000 genomes]
rs10141709	0.93[AFR][1000 genomes]
rs10145173	0.94[AFR][1000 genomes]
rs11158527	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11158528	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17101624	0.90[AFR][1000 genomes]
rs17101626	0.96[AFR][1000 genomes]
rs17101637	0.94[AFR][1000 genomes]
rs17101640	0.84[AFR][1000 genomes]
rs17101659	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35203186	0.95[ASN][1000 genomes]
rs72720306	0.94[AFR][1000 genomes]
rs72720309	0.94[AFR][1000 genomes]
rs72720319	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
3	chr14:64489400-64568600	Weak transcription	Small Intestine	intestine
4	chr14:64491200-64565200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
6	chr14:64525400-64566600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:64526800-64577000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:64527800-64556600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:64528000-64557000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:64528000-64567400	Weak transcription	Fetal Heart	heart
11	chr14:64529400-64566800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:64542200-64557800	Weak transcription	HMEC	breast
13	chr14:64542800-64574000	Weak transcription	HUVEC	blood vessel
14	chr14:64542800-64575400	Weak transcription	Hela-S3	cervix
15	chr14:64543000-64576400	Weak transcription	NHDF-Ad	bronchial
16	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr14:64547000-64573800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:64548000-64556600	Weak transcription	Gastric	stomach
19	chr14:64548400-64556600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:64548400-64556600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:64548400-64556600	Weak transcription	NHEK	skin
22	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:64548600-64564800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:64548800-64562400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:64549600-64556600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:64549600-64564000	Weak transcription	Right Ventricle	heart
27	chr14:64549600-64564200	Weak transcription	Colonic Mucosa	Colon
28	chr14:64549800-64556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:64549800-64556600	Weak transcription	Thymus	Thymus
30	chr14:64549800-64556800	Weak transcription	Lung	lung
31	chr14:64549800-64557000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:64549800-64563600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:64549800-64564200	Weak transcription	Esophagus	oesophagus
34	chr14:64549800-64564600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:64549800-64564600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:64549800-64564600	Weak transcription	Spleen	Spleen
37	chr14:64549800-64570200	Weak transcription	Psoas Muscle	Psoas
38	chr14:64549800-64579800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:64550000-64556600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:64550000-64556600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr14:64550000-64557200	Weak transcription	Ovary	ovary
42	chr14:64550000-64557600	Weak transcription	Primary B cells from peripheral blood	blood
43	chr14:64550000-64558200	Weak transcription	Fetal Brain Female	brain
44	chr14:64550000-64562400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr14:64550400-64556600	Weak transcription	Fetal Muscle Leg	muscle
46	chr14:64550400-64556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr14:64550400-64557600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr14:64550400-64558000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:64550400-64558000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr14:64550400-64559200	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links