The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs72722216
Chromosome Location
chr8:127742290-127742291
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr8:127568938..127570883-chr8:127740870..127743793,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000254010
Chromatin interaction
ENSG00000254286
Chromatin interaction
ENSG00000168672
Chromatin interaction
Extended variants information (count: 4 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs10505487
1.00[AFR][1000 genomes]
rs11987858
1.00[AFR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv891438
chr8:127670339-127845702
Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNA
10 gene(s)
inside rSNPs
diseases
2
nsv831455
chr8:127681762-127786257
Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
8 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links