Variant report

Variant	rs72723747
Chromosome Location	chr4:152106284-152106285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152100696..152102854-chr4:152105913..152107638,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs55644104	1.00[AMR][1000 genomes]
rs55744848	1.00[EUR][1000 genomes]
rs55752281	1.00[AMR][1000 genomes]
rs56085192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56241356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56357656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56385344	1.00[AMR][1000 genomes]
rs72719692	1.00[AMR][1000 genomes]
rs72719693	1.00[AMR][1000 genomes]
rs72719695	1.00[AMR][1000 genomes]
rs72721703	1.00[AMR][1000 genomes]
rs72721704	1.00[AMR][1000 genomes]
rs72721706	1.00[AMR][1000 genomes]
rs72721708	1.00[AMR][1000 genomes]
rs72721716	1.00[AMR][1000 genomes]
rs72721719	1.00[AMR][1000 genomes]
rs72721721	1.00[AMR][1000 genomes]
rs72721722	1.00[AMR][1000 genomes]
rs72721726	1.00[AMR][1000 genomes]
rs72721728	1.00[AMR][1000 genomes]
rs72721731	1.00[AMR][1000 genomes]
rs72721732	1.00[AMR][1000 genomes]
rs72721733	1.00[AMR][1000 genomes]
rs72721734	1.00[AMR][1000 genomes]
rs72721739	1.00[AMR][1000 genomes]
rs72721745	1.00[AMR][1000 genomes]
rs72721755	1.00[AMR][1000 genomes]
rs72721758	1.00[AMR][1000 genomes]
rs72721759	1.00[AMR][1000 genomes]
rs72721765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723763	1.00[EUR][1000 genomes]
rs72723765	1.00[EUR][1000 genomes]
rs72723778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv948719	chr4:151693149-152161625	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv595690	chr4:151788955-152109552	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1016220	chr4:151997139-152164126	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv537306	chr4:151997139-152164126	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152088200-152114600	Weak transcription	Psoas Muscle	Psoas
2	chr4:152091200-152107000	Weak transcription	HSMMtube	muscle
3	chr4:152096600-152118000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:152096800-152106400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:152096800-152106400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:152096800-152120600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:152097200-152106400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:152097200-152123600	Weak transcription	Pancreas	Pancrea
9	chr4:152097200-152136600	Weak transcription	Colonic Mucosa	Colon
10	chr4:152097400-152111600	Weak transcription	Lung	lung
11	chr4:152097400-152123600	Weak transcription	Aorta	Aorta
12	chr4:152097600-152110800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:152097600-152111400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:152097600-152111600	Weak transcription	Fetal Stomach	stomach
15	chr4:152097600-152128800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:152097800-152110000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:152097800-152111400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:152097800-152117200	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:152097800-152120000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:152098000-152107400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:152098200-152106400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:152098200-152107000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:152098200-152111600	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:152098200-152117000	Weak transcription	Brain Anterior Caudate	brain
25	chr4:152098200-152118400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:152098400-152111400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:152098400-152111400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:152098400-152116600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:152098400-152118400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:152098400-152147200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr4:152100200-152116600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:152100400-152106600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:152100600-152118000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:152102400-152106600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr4:152102600-152106400	Strong transcription	HepG2	liver
36	chr4:152104000-152110800	Weak transcription	Adipose Nuclei	Adipose
37	chr4:152105200-152107400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:152105200-152107400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:152105600-152106600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr4:152105600-152106600	Enhancers	Gastric	stomach
41	chr4:152105600-152106800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:152105600-152106800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr4:152105600-152106800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:152105600-152106800	Enhancers	Fetal Intestine Large	intestine
45	chr4:152105600-152106800	Enhancers	Fetal Intestine Small	intestine
46	chr4:152105600-152107000	Enhancers	NHLF	lung
47	chr4:152105600-152107400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:152105600-152107400	Enhancers	Osteobl	bone
49	chr4:152105600-152107600	Enhancers	Fetal Heart	heart
50	chr4:152105800-152106400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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