Variant report

Variant	rs72724904
Chromosome Location	chr8:125259369-125259370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125259085..125259702-chr8:125384481..125385306,2	MCF-7	breast:
2	chr8:125250083..125252599-chr8:125256637..125259576,2	MCF-7	breast:
3	chr8:125258129..125260887-chr8:125283574..125285765,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction
ENSG00000253227	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16899467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360508	0.91[ASN][1000 genomes]
rs55777105	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56306432	0.90[ASN][1000 genomes]
rs72724903	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831452	chr8:125099708-125259926	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125249400-125259400	Weak transcription	Right Ventricle	heart
2	chr8:125250400-125267600	Weak transcription	Fetal Heart	heart
3	chr8:125258000-125259400	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:125258000-125259800	Enhancers	Spleen	Spleen
5	chr8:125258400-125259400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:125258400-125259400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:125258400-125282800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:125258600-125259400	Weak transcription	Esophagus	oesophagus
9	chr8:125258800-125259400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:125258800-125259400	Enhancers	HUVEC	blood vessel
11	chr8:125258800-125260600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:125259000-125259400	Weak transcription	Left Ventricle	heart
13	chr8:125259000-125259400	Enhancers	Hela-S3	cervix
14	chr8:125259000-125259600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:125259000-125259600	Enhancers	Pancreas	Pancrea
16	chr8:125259000-125259800	Bivalent Enhancer	Adipose Nuclei	Adipose
17	chr8:125259000-125259800	Enhancers	Fetal Muscle Leg	muscle
18	chr8:125259000-125260000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr8:125259000-125260000	Enhancers	NH-A	brain
20	chr8:125259000-125260200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:125259000-125260200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr8:125259200-125259400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:125259200-125259400	Enhancers	Osteobl	bone
24	chr8:125259200-125259600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:125259200-125259600	Bivalent Enhancer	Primary B cells from cord blood	blood
26	chr8:125259200-125259600	Enhancers	Stomach Mucosa	stomach
27	chr8:125259200-125259800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr8:125259200-125260000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr8:125259200-125260000	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr8:125259200-125260200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:125259200-125260200	Enhancers	A549	lung
32	chr8:125259200-125260400	Enhancers	GM12878-XiMat	blood
33	chr8:125259200-125260800	Enhancers	Primary B cells from peripheral blood	blood

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