Variant report

Variant	rs72724997
Chromosome Location	chr15:31796207-31796208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1075232	0.82[ASN][1000 genomes]
rs11858516	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12438482	0.93[ASN][1000 genomes]
rs12440108	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12441163	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956738	0.81[ASN][1000 genomes]
rs16956797	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956838	0.86[ASN][1000 genomes]
rs56249651	0.84[ASN][1000 genomes]
rs57491435	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57924788	0.82[ASN][1000 genomes]
rs58156651	0.82[ASN][1000 genomes]
rs60333545	0.90[ASN][1000 genomes]
rs66581165	0.82[ASN][1000 genomes]
rs67216354	0.84[ASN][1000 genomes]
rs67634762	0.82[ASN][1000 genomes]
rs67699697	0.84[ASN][1000 genomes]
rs7166243	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724938	0.82[ASN][1000 genomes]
rs72724958	0.82[ASN][1000 genomes]
rs72724993	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31782400-31821000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:31786600-31800400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:31787200-31810800	Weak transcription	Pancreas	Pancrea
4	chr15:31791600-31797000	Strong transcription	Brain Cingulate Gyrus	brain
5	chr15:31791800-31796600	Weak transcription	HMEC	breast
6	chr15:31792600-31796800	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr15:31793800-31796400	Strong transcription	Brain Angular Gyrus	brain
8	chr15:31795000-31796400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:31795600-31797400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:31795600-31802200	Weak transcription	Fetal Brain Female	brain
11	chr15:31795800-31798200	Weak transcription	Ovary	ovary
12	chr15:31796000-31802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:31796200-31797600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:31796200-31802400	Weak transcription	Brain Anterior Caudate	brain
15	chr15:31796200-31802400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:31796200-31802400	Weak transcription	Brain Substantia Nigra	brain

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