Variant report

Variant	rs72726278
Chromosome Location	chr1:91761857-91761858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12125586	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12128042	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12129120	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12129878	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12133055	0.83[AMR][1000 genomes]
rs12142604	0.83[EUR][1000 genomes]
rs12144808	0.83[EUR][1000 genomes]
rs17131428	0.83[EUR][1000 genomes]
rs17556716	0.87[EUR][1000 genomes]
rs41286785	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60719104	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72726302	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91749000-91774600	Weak transcription	Ovary	ovary
2	chr1:91752400-91762200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:91761800-91762400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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