Variant report

Variant	rs72729391
Chromosome Location	chr15:38994976-38994977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:38992373..38995207-chr15:38996708..38999312,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72729395	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38989000-38997400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:38989000-38997600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:38989000-38997600	Weak transcription	HSMM	muscle
4	chr15:38991400-38996200	Weak transcription	Thymus	Thymus
5	chr15:38991800-38996400	Weak transcription	Fetal Thymus	thymus
6	chr15:38992200-38995400	Enhancers	Fetal Intestine Large	intestine
7	chr15:38992400-38995400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr15:38992800-38996800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:38993000-38995000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:38993000-38997600	Weak transcription	Small Intestine	intestine
11	chr15:38993200-38995400	Enhancers	Fetal Intestine Small	intestine
12	chr15:38993600-38995200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:38993600-38995400	Enhancers	Pancreas	Pancrea
14	chr15:38993600-38995400	Enhancers	Stomach Mucosa	stomach
15	chr15:38994200-38995200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:38994200-38995200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr15:38994200-38995400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr15:38994200-38995400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:38994200-38995400	Enhancers	HepG2	liver
20	chr15:38994400-38995200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:38994400-38995200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:38994400-38995200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:38994400-38995200	Enhancers	Gastric	stomach
24	chr15:38994400-38995200	Enhancers	A549	lung
25	chr15:38994400-38995400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr15:38994400-38995400	Enhancers	Liver	Liver
27	chr15:38994600-38995000	Active TSS	Duodenum Mucosa	Duodenum
28	chr15:38994600-38995200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:38994600-38995400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr15:38994600-38995400	Enhancers	HMEC	breast
31	chr15:38994600-39000800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:38994800-38998000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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