Variant report

Variant	rs72730964
Chromosome Location	chr15:52029203-52029204
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52028180..52031136-chr15:52040562..52045385,6	MCF-7	breast:
2	chr15:52005662..52007756-chr15:52028876..52031424,2	MCF-7	breast:
3	chr15:51914058..51915723-chr15:52028393..52030272,2	MCF-7	breast:
4	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
5	chr15:52026672..52029372-chr15:52056834..52058990,2	MCF-7	breast:
6	chr15:51762002..51764362-chr15:52028309..52030001,2	MCF-7	breast:
7	chr15:52026416..52029376-chr15:52033345..52036135,2	K562	blood:
8	chr15:51911576..51916583-chr15:52027382..52031699,5	MCF-7	breast:
9	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000104093	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000259296	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	esv3322785	chr15:52028185-52031033	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a
3	esv3433188	chr15:52028510-52031058	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a
4	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52026400-52029400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:52027000-52030400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:52027200-52029400	Flanking Active TSS	Dnd41	blood
4	chr15:52027400-52029400	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr15:52027800-52029400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr15:52027800-52029400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:52028000-52029400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr15:52028200-52029400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:52028400-52029400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:52028400-52029400	Flanking Active TSS	Fetal Thymus	thymus
11	chr15:52028400-52030000	Active TSS	Colonic Mucosa	Colon
12	chr15:52028400-52030200	Active TSS	Fetal Brain Female	brain
13	chr15:52028400-52030200	Active TSS	GM12878-XiMat	blood
14	chr15:52028600-52029400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:52028600-52029400	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr15:52028600-52030200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr15:52028600-52030400	Active TSS	Fetal Intestine Small	intestine
18	chr15:52028600-52030400	Active TSS	Right Atrium	heart
19	chr15:52028800-52029400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:52028800-52029400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr15:52028800-52029400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:52028800-52029400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:52028800-52029400	Bivalent/Poised TSS	Fetal Kidney	kidney
24	chr15:52028800-52029400	Flanking Active TSS	Fetal Muscle Trunk	muscle
25	chr15:52028800-52029400	Flanking Active TSS	Placenta	Placenta
26	chr15:52028800-52029400	Flanking Active TSS	NHEK	skin
27	chr15:52028800-52029400	Flanking Active TSS	Osteobl	bone
28	chr15:52028800-52030000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:52028800-52030200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr15:52028800-52030200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:52028800-52030200	Active TSS	Left Ventricle	heart
32	chr15:52028800-52030200	Active TSS	Psoas Muscle	Psoas
33	chr15:52028800-52030200	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr15:52028800-52030400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
35	chr15:52028800-52030400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:52028800-52030400	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr15:52028800-52030400	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr15:52028800-52030400	Active TSS	Lung	lung
39	chr15:52028800-52030400	Active TSS	Ovary	ovary
40	chr15:52028800-52030600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr15:52028800-52030600	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr15:52029000-52029400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
43	chr15:52029000-52029400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
44	chr15:52029000-52029400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:52029000-52029400	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:52029000-52029400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:52029000-52029400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:52029000-52029400	Flanking Active TSS	Fetal Muscle Leg	muscle
49	chr15:52029000-52029400	Flanking Active TSS	Right Ventricle	heart
50	chr15:52029000-52029400	Flanking Active TSS	HSMMtube	muscle

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