Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:49955894..49958426-chr15:49959044..49961456,2	MCF-7	breast:
2	chr15:49959156..49961709-chr15:49969639..49971323,2	MCF-7	breast:
3	chr15:49912031..49914987-chr15:49959413..49961383,3	MCF-7	breast:
4	chr15:49958418..49961661-chr15:49962347..49965829,3	K562	blood:

Variant related genes	Relation type
ENSG00000166262	Chromatin interaction
ENSG00000104047	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12591533	0.82[ASN][1000 genomes]
rs12594585	0.86[ASN][1000 genomes]
rs12595447	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17482833	0.96[ASN][1000 genomes]
rs34833569	0.82[ASN][1000 genomes]
rs57496745	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58275754	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59589271	0.85[ASN][1000 genomes]
rs72729121	0.82[ASN][1000 genomes]
rs72729125	0.84[ASN][1000 genomes]
rs72729127	0.85[ASN][1000 genomes]
rs72729130	0.84[ASN][1000 genomes]
rs72729132	0.85[ASN][1000 genomes]
rs72729199	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72731108	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72731111	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72731116	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72731119	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72731121	0.84[EUR][1000 genomes]
rs72731122	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72731124	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72731125	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72731140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731160	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49955600-49961400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:49956600-49961400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:49957200-49965600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:49960400-49965400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: