Variant report

Variant	rs72731947
Chromosome Location	chr15:57427965-57427966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72731904	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72731917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72749452	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57387000-57430000	Weak transcription	Placenta	Placenta
2	chr15:57387600-57442400	Weak transcription	Fetal Intestine Large	intestine
3	chr15:57410600-57440800	Weak transcription	Ovary	ovary
4	chr15:57411000-57428200	Weak transcription	NHLF	lung
5	chr15:57411000-57430400	Weak transcription	NH-A	brain
6	chr15:57413800-57428800	Weak transcription	Gastric	stomach
7	chr15:57415000-57428400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:57415000-57438800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:57415600-57438800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:57416000-57438800	Weak transcription	Primary B cells from cord blood	blood
11	chr15:57416800-57430800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:57419000-57428400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:57419600-57439000	Weak transcription	Fetal Intestine Small	intestine
14	chr15:57420600-57428200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:57421800-57436600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:57422600-57430400	Weak transcription	Fetal Heart	heart
17	chr15:57423200-57428400	Enhancers	Primary T cells from cord blood	blood
18	chr15:57424200-57428400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:57424400-57428600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr15:57424600-57428200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:57424600-57428200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr15:57424600-57428400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr15:57424800-57428400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr15:57425000-57428200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:57425200-57428000	Enhancers	NHDF-Ad	bronchial
26	chr15:57425200-57428400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr15:57425200-57428600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:57425400-57428600	Enhancers	Fetal Kidney	kidney
29	chr15:57425600-57432200	Enhancers	Fetal Lung	lung
30	chr15:57425800-57428000	Weak transcription	Osteobl	bone
31	chr15:57425800-57428400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:57425800-57428400	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:57425800-57428400	Weak transcription	Left Ventricle	heart
34	chr15:57425800-57429000	Enhancers	Brain Anterior Caudate	brain
35	chr15:57425800-57429000	Enhancers	Brain Germinal Matrix	brain
36	chr15:57425800-57429200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr15:57425800-57429800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:57425800-57430400	Weak transcription	Right Atrium	heart
39	chr15:57425800-57430400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:57425800-57434800	Strong transcription	Fetal Thymus	thymus
41	chr15:57425800-57438800	Weak transcription	HSMM	muscle
42	chr15:57425800-57440800	Weak transcription	Thymus	Thymus
43	chr15:57425800-57442200	Weak transcription	Right Ventricle	heart
44	chr15:57426000-57428000	Enhancers	Brain Angular Gyrus	brain
45	chr15:57426000-57429000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr15:57426000-57431000	Enhancers	Brain Hippocampus Middle	brain
47	chr15:57426000-57431800	Enhancers	Brain Substantia Nigra	brain
48	chr15:57426200-57428400	Enhancers	Fetal Brain Male	brain
49	chr15:57426200-57432400	Enhancers	Brain Cingulate Gyrus	brain
50	chr15:57426400-57429000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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