Variant report

Variant	rs72732403
Chromosome Location	chr4:151098100-151098101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10001645	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10001651	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10020361	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10029811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10033999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10520059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12019295	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17026748	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28361896	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28377256	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28501175	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28598870	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28616626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28635652	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28673979	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4353883	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59085186	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60526300	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62338194	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62338212	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62338216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7438777	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9884239	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9884665	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9997755	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:151091600-151104800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:151094200-151098200	Enhancers	Fetal Muscle Leg	muscle
4	chr4:151095400-151100000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:151095400-151101400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:151096000-151099800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:151096200-151100000	Enhancers	HSMMtube	muscle
8	chr4:151096400-151100000	Enhancers	Fetal Brain Male	brain
9	chr4:151096600-151098200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:151096600-151098200	Enhancers	Fetal Stomach	stomach
11	chr4:151096600-151098400	Enhancers	NHEK	skin
12	chr4:151096800-151098400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:151096800-151100000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:151096800-151100000	Enhancers	NHDF-Ad	bronchial
15	chr4:151097000-151098200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:151097000-151098400	Enhancers	Colon Smooth Muscle	Colon
17	chr4:151097000-151098600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:151097000-151100200	Enhancers	Fetal Brain Female	brain
19	chr4:151097200-151098200	Enhancers	Adipose Nuclei	Adipose
20	chr4:151097200-151098200	Enhancers	Fetal Lung	lung
21	chr4:151097200-151098400	Enhancers	Brain Cingulate Gyrus	brain
22	chr4:151097200-151098800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr4:151097200-151099200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:151097200-151100000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:151097200-151100000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr4:151097200-151100000	Enhancers	Osteobl	bone
27	chr4:151097200-151100200	Enhancers	HSMM	muscle
28	chr4:151097400-151098200	Flanking Active TSS	Fetal Heart	heart
29	chr4:151097400-151098200	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:151097400-151098200	Enhancers	HMEC	breast
31	chr4:151097400-151098200	Enhancers	NH-A	brain
32	chr4:151097400-151098400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:151097400-151098400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:151097400-151098400	Enhancers	Brain Hippocampus Middle	brain
35	chr4:151097400-151102800	Weak transcription	Fetal Thymus	thymus
36	chr4:151097600-151098200	Enhancers	A549	lung
37	chr4:151097600-151098400	Enhancers	Brain Substantia Nigra	brain
38	chr4:151097600-151099000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:151097600-151099600	Weak transcription	Fetal Kidney	kidney
40	chr4:151097600-151113800	Weak transcription	Aorta	Aorta
41	chr4:151097600-151129000	Weak transcription	Lung	lung
42	chr4:151097800-151101200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr4:151098000-151098200	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr4:151098000-151101400	Weak transcription	NHLF	lung
45	chr4:151098000-151101600	Weak transcription	Brain Anterior Caudate	brain
46	chr4:151098000-151102000	Weak transcription	Left Ventricle	heart
47	chr4:151098000-151102400	Weak transcription	Brain Angular Gyrus	brain
48	chr4:151098000-151102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:151098000-151102400	Weak transcription	Right Atrium	heart
50	chr4:151098000-151102800	Weak transcription	Ovary	ovary

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