Variant report

Variant	rs72732547
Chromosome Location	chr15:78328665-78328666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:78328015-78328756	HepG2	liver:	n/a	n/a
2	MAX	chr15:78326243-78328842	NB4	blood:	n/a	chr15:78326421-78326432 chr15:78326515-78326524
3	SMC3	chr15:78328138-78328665	HepG2	liver:	n/a	n/a
4	NR2F2	chr15:78328077-78328747	HepG2	liver:	n/a	n/a
5	MYC	chr15:78328654-78328869	NB4	blood:	n/a	n/a
6	FOXA1	chr15:78328187-78328740	HepG2	liver:	n/a	n/a
7	FOXA2	chr15:78328170-78328668	HepG2	liver:	n/a	n/a
8	EP300	chr15:78328099-78328673	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:78324962..78326777-chr15:78328172..78330506,2	K562	blood:
2	chr15:78326298..78328930-chr15:78337722..78339392,2	MCF-7	breast:
3	chr15:78326751..78329240-chr15:78339256..78341988,2	K562	blood:
4	chr15:78326771..78328887-chr15:78329964..78334195,3	K562	blood:

Variant related genes	Relation type
MIR1827	TF binding region
ENSG00000221476	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55999906	0.84[EUR][1000 genomes]
rs72732570	0.84[EUR][1000 genomes]
rs72732571	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78305400-78329800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:78309200-78330200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:78309200-78330800	Weak transcription	A549	lung
8	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:78316000-78332400	Weak transcription	Hela-S3	cervix
10	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:78317800-78331000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:78317800-78344400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:78317800-78344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:78320200-78334400	Weak transcription	Aorta	Aorta
16	chr15:78320400-78331800	Weak transcription	Esophagus	oesophagus
17	chr15:78321200-78343800	Weak transcription	NHEK	skin
18	chr15:78322200-78336600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:78322200-78341000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:78322400-78336600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:78324000-78332200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:78324400-78330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:78324600-78334400	Weak transcription	Ovary	ovary
24	chr15:78325600-78337800	Genic enhancers	Fetal Thymus	thymus
25	chr15:78325800-78333600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr15:78326000-78331600	Enhancers	HUVEC	blood vessel
27	chr15:78326200-78329000	Enhancers	Brain Substantia Nigra	brain
28	chr15:78326200-78332000	Genic enhancers	Fetal Intestine Small	intestine
29	chr15:78326200-78332800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:78326400-78328800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr15:78326400-78331600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr15:78326400-78332000	Genic enhancers	Fetal Muscle Leg	muscle
33	chr15:78326600-78328800	Enhancers	Left Ventricle	heart
34	chr15:78326600-78328800	Genic enhancers	HSMM	muscle
35	chr15:78326600-78329200	Enhancers	Pancreas	Pancrea
36	chr15:78326600-78329600	Genic enhancers	Fetal Intestine Large	intestine
37	chr15:78326600-78329600	Enhancers	Stomach Mucosa	stomach
38	chr15:78326600-78331200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:78326600-78331200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:78326600-78331400	Enhancers	Spleen	Spleen
41	chr15:78326600-78332000	Genic enhancers	Placenta	Placenta
42	chr15:78326600-78332000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
43	chr15:78326800-78328800	Enhancers	K562	blood
44	chr15:78326800-78329000	Enhancers	Fetal Heart	heart
45	chr15:78326800-78329200	Genic enhancers	Gastric	stomach
46	chr15:78327200-78329000	Enhancers	Adipose Nuclei	Adipose
47	chr15:78327200-78330400	Enhancers	Brain Anterior Caudate	brain
48	chr15:78327400-78329600	Enhancers	Liver	Liver
49	chr15:78327400-78330200	Enhancers	Primary T cells fromperipheralblood	blood
50	chr15:78327400-78330400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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