Variant report

Variant	rs72732557
Chromosome Location	chr5:36692856-36692857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36691466..36693215-chr5:36699062..36701158,2	K562	blood:
2	chr5:36414744..36416337-chr5:36692750..36693943,6	MCF-7	breast:
3	chr5:36507187..36508089-chr5:36692700..36694128,7	MCF-7	breast:
4	chr5:36602536..36603410-chr5:36692728..36693815,5	MCF-7	breast:
5	chr5:36405950..36408490-chr5:36690629..36693199,2	MCF-7	breast:
6	chr5:36691466..36694472-chr5:36698909..36701158,3	K562	blood:
7	chr5:36690529..36693380-chr5:36876216..36878576,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56362130	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv969921	chr5:36645147-36696229	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880571	chr5:36675699-36710205	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36684200-36693200	Weak transcription	Spleen	Spleen
2	chr5:36690600-36693000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:36690600-36693000	Enhancers	HSMM	muscle
4	chr5:36690600-36702800	Weak transcription	Aorta	Aorta
5	chr5:36690800-36693000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:36690800-36693000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:36690800-36693000	Enhancers	Fetal Muscle Leg	muscle
8	chr5:36690800-36693000	Weak transcription	HUVEC	blood vessel
9	chr5:36690800-36693000	Enhancers	NH-A	brain
10	chr5:36691000-36693000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:36691000-36693000	Enhancers	Adipose Nuclei	Adipose
12	chr5:36691000-36693000	Weak transcription	Liver	Liver
13	chr5:36691000-36693000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:36691000-36693000	Weak transcription	Psoas Muscle	Psoas
15	chr5:36691000-36693000	Weak transcription	Thymus	Thymus
16	chr5:36691000-36693200	Weak transcription	Pancreas	Pancrea
17	chr5:36691000-36693200	Enhancers	Osteobl	bone
18	chr5:36691000-36693400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:36691000-36693400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:36691000-36695000	Enhancers	Fetal Heart	heart
21	chr5:36691200-36693000	Enhancers	Brain Anterior Caudate	brain
22	chr5:36691600-36693000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr5:36691600-36693000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:36691600-36693600	Enhancers	Colon Smooth Muscle	Colon
25	chr5:36691800-36693000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:36691800-36693000	Enhancers	Rectal Smooth Muscle	rectum
27	chr5:36691800-36693000	Weak transcription	Hela-S3	cervix
28	chr5:36692000-36693000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr5:36692000-36693400	Enhancers	Right Atrium	heart
30	chr5:36692000-36693800	Enhancers	Placenta	Placenta
31	chr5:36692200-36693000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:36692200-36693000	Enhancers	Brain Cingulate Gyrus	brain
33	chr5:36692200-36693000	Enhancers	Right Ventricle	heart
34	chr5:36692200-36693400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:36692200-36693400	Enhancers	Left Ventricle	heart
36	chr5:36692200-36693400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr5:36692200-36693800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr5:36692200-36693800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr5:36692400-36693000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr5:36692400-36693600	Bivalent Enhancer	Fetal Brain Male	brain
41	chr5:36692600-36693000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
42	chr5:36692600-36693000	Enhancers	Primary B cells from cord blood	blood
43	chr5:36692600-36693000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:36692600-36693000	Enhancers	Fetal Muscle Trunk	muscle
45	chr5:36692600-36693200	Bivalent Enhancer	Fetal Thymus	thymus
46	chr5:36692600-36693400	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr5:36692600-36693600	Weak transcription	HSMMtube	muscle
48	chr5:36692600-36695000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:36692800-36693000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:36692800-36693000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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