Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:78432028-78432237	IMR90	lung:	n/a	n/a
2	CEBPB	chr15:78431925-78432257	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr15:78431890-78432225	ECC-1	luminal epithelium:	n/a	n/a
4	CEBPB	chr15:78431935-78432267	HepG2	liver:	n/a	n/a
5	CEBPB	chr15:78431925-78432256	H1-hESC	embryonic stem cell:	n/a	n/a
6	CEBPB	chr15:78431973-78432228	K562	blood:	n/a	n/a
7	CEBPB	chr15:78431897-78432308	MCF-7	breast:	n/a	n/a
8	CEBPB	chr15:78431893-78432267	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000260988	TF binding region

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11636385	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55681349	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67000301	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs72732574	CIB2	cis	Esophagus Mucosa	GTEx
rs72732574	CIB2	cis	Thyroid	GTEx
rs72732574	RP11-114H24.2	cis	Muscle Skeletal	GTEx

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78424400-78433400	Weak transcription	Ovary	ovary
2	chr15:78424600-78440800	Weak transcription	HSMMtube	muscle
3	chr15:78425000-78440600	Weak transcription	Fetal Stomach	stomach
4	chr15:78425400-78432600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:78425400-78436800	Weak transcription	Adipose Nuclei	Adipose
6	chr15:78426000-78435800	Weak transcription	Thymus	Thymus
7	chr15:78426000-78440200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:78427200-78438600	Weak transcription	Placenta	Placenta
9	chr15:78427200-78439200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:78428200-78435400	Enhancers	Fetal Intestine Large	intestine
11	chr15:78428600-78432200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:78428600-78435400	Enhancers	Fetal Intestine Small	intestine
13	chr15:78428800-78432200	Weak transcription	Stomach Mucosa	stomach
14	chr15:78430600-78432200	Weak transcription	HepG2	liver
15	chr15:78431400-78432400	Enhancers	Duodenum Mucosa	Duodenum
16	chr15:78431600-78432200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr15:78431600-78432600	Enhancers	Small Intestine	intestine
18	chr15:78431600-78433600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr15:78431800-78433400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr15:78431800-78433600	Enhancers	Liver	Liver

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