Variant report

Variant	rs72732818
Chromosome Location	chr15:75478123-75478124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75462559..75465453-chr15:75476953..75478984,3	MCF-7	breast:
2	chr15:75478122..75480662-chr15:75494393..75496768,2	MCF-7	breast:
3	chr15:75477700..75479387-chr15:75492353..75494507,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11630576	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75473000-75478800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:75473000-75487600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:75473200-75483200	Weak transcription	Aorta	Aorta
4	chr15:75473200-75483400	Weak transcription	Left Ventricle	heart
5	chr15:75475200-75478400	Weak transcription	Thymus	Thymus
6	chr15:75475400-75487800	Weak transcription	Right Atrium	heart
7	chr15:75475600-75480600	Weak transcription	HepG2	liver
8	chr15:75475600-75481600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:75475600-75487600	Weak transcription	Pancreas	Pancrea
10	chr15:75476400-75479000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:75476600-75478200	Enhancers	GM12878-XiMat	blood
12	chr15:75476600-75478800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:75476600-75479200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:75476800-75478400	Enhancers	Primary B cells from peripheral blood	blood
15	chr15:75476800-75479000	Enhancers	Primary hematopoietic stem cells	blood
16	chr15:75476800-75479800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr15:75477000-75478800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:75477200-75478400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:75477200-75492600	Weak transcription	Spleen	Spleen
20	chr15:75477600-75478800	Enhancers	Fetal Heart	heart
21	chr15:75477600-75478800	Enhancers	Fetal Thymus	thymus
22	chr15:75477800-75478200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr15:75477800-75478600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:75477800-75478600	Enhancers	Right Ventricle	heart
25	chr15:75477800-75478800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr15:75477800-75478800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr15:75477800-75479200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr15:75478000-75478200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:75478000-75478800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:75478000-75478800	Enhancers	Lung	lung

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