Variant report

Variant	rs72732847
Chromosome Location	chr15:75831437-75831438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75831436-75831448	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75829509..75831948-chr15:75932181..75934351,2	MCF-7	breast:
2	chr15:75830608..75832951-chr15:75924851..75928314,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203473	TF binding region
ENSG00000177971	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56258187	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv904390	chr15:75795177-75840943	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv819520	chr15:75819453-75865881	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75816000-75838000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:75817800-75843200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:75819600-75832400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:75819600-75834200	Weak transcription	Fetal Intestine Large	intestine
5	chr15:75819600-75834600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:75819600-75834600	Weak transcription	GM12878-XiMat	blood
7	chr15:75819600-75834800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:75819600-75836600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:75819600-75836600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:75819600-75837400	Weak transcription	Spleen	Spleen
11	chr15:75819600-75865000	Weak transcription	Primary B cells from cord blood	blood
12	chr15:75819600-75866200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:75819600-75869200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:75819800-75832000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:75819800-75834600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:75819800-75834800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:75819800-75836600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:75819800-75836600	Weak transcription	Dnd41	blood
19	chr15:75819800-75839000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:75819800-75840200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:75819800-75860800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:75819800-75869600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:75820000-75835600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:75820000-75835600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr15:75820000-75844000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:75820400-75836200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:75823600-75832800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:75823800-75837400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:75823800-75839000	Weak transcription	Fetal Brain Female	brain
30	chr15:75823800-75858000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr15:75823800-75869600	Weak transcription	Fetal Thymus	thymus
32	chr15:75824600-75869800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:75825200-75834600	Weak transcription	Fetal Kidney	kidney
34	chr15:75825200-75834800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:75825200-75836800	Weak transcription	Thymus	Thymus
36	chr15:75825400-75833000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:75825400-75834600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:75825400-75835800	Weak transcription	Primary T cells from cord blood	blood
39	chr15:75825400-75837200	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:75825400-75839000	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:75825400-75849800	Weak transcription	Brain Anterior Caudate	brain
42	chr15:75825400-75857800	Weak transcription	NH-A	brain
43	chr15:75825600-75834600	Weak transcription	Fetal Lung	lung
44	chr15:75825600-75834600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:75825600-75859400	Weak transcription	Fetal Stomach	stomach
46	chr15:75825800-75833000	Weak transcription	Left Ventricle	heart
47	chr15:75825800-75834400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:75825800-75834600	Weak transcription	HSMMtube	muscle
49	chr15:75825800-75834600	Weak transcription	Osteobl	bone
50	chr15:75825800-75834800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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