Variant report

Variant	rs72733863
Chromosome Location	chr9:73857825-73857826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1504383	0.83[ASN][1000 genomes]
rs57867487	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72733807	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72733811	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72733832	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72733849	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72733873	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733883	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73853400-73858800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:73854600-73860600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:73855200-73858600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:73855600-73858800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:73855600-73860400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:73856200-73858600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:73856200-73858600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:73856600-73858800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:73857000-73858600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73857000-73859200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:73857400-73858000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:73857600-73861600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:73857800-73858000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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