The 2.0 version of rSNPBase

Variant report

Variant rs7273406
Chromosome Location chr20:16420140-16420141
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16384000-16432600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr20:16392200-16453000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr20:16398200-16431000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr20:16400000-16440000 Weak transcription NHEK skin
5 chr20:16404800-16425000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr20:16405400-16434600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr20:16405600-16431000 Weak transcription Pancreas Pancrea
8 chr20:16408000-16420200 Weak transcription Primary B cells from cord blood blood
9 chr20:16408400-16424400 Weak transcription Primary T cells fromperipheralblood blood
10 chr20:16408600-16439200 Weak transcription Brain Hippocampus Middle brain
11 chr20:16408800-16424600 Weak transcription Small Intestine intestine
12 chr20:16409000-16431200 Weak transcription Aorta Aorta
13 chr20:16409200-16439400 Weak transcription Rectal Smooth Muscle rectum
14 chr20:16409200-16443600 Weak transcription Gastric stomach
15 chr20:16409600-16431000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr20:16410200-16424400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr20:16410200-16437400 Weak transcription Esophagus oesophagus
18 chr20:16410200-16455800 Weak transcription Duodenum Mucosa Duodenum
19 chr20:16410200-16473200 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr20:16410400-16424600 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr20:16410400-16431000 Weak transcription Liver Liver
22 chr20:16410600-16425200 Weak transcription Stomach Smooth Muscle stomach
23 chr20:16410600-16455400 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr20:16411000-16424400 Weak transcription Adipose Nuclei Adipose
25 chr20:16411200-16439200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr20:16411200-16440000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr20:16411200-16455200 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr20:16414400-16424600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr20:16414800-16421000 Weak transcription Fetal Brain Male brain
30 chr20:16414800-16424400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr20:16414800-16443600 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr20:16417000-16431000 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr20:16418400-16420400 Enhancers Fetal Muscle Leg muscle
34 chr20:16418600-16420200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr20:16419200-16420200 Enhancers Fetal Heart heart
36 chr20:16419200-16420200 Enhancers Skeletal Muscle Male skeletal muscle
37 chr20:16419200-16420400 Enhancers Left Ventricle heart
38 chr20:16419200-16420400 Enhancers Psoas Muscle Psoas
39 chr20:16419200-16421000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr20:16419400-16420800 ZNF genes & repeats Primary hematopoietic stem cells blood
41 chr20:16419600-16420400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr20:16419600-16420400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
43 chr20:16419600-16420600 ZNF genes & repeats Fetal Intestine Small intestine
44 chr20:16419800-16420400 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr20:16419800-16420400 ZNF genes & repeats Primary T cells from cord blood blood
46 chr20:16420000-16420400 ZNF genes & repeats Fetal Intestine Large intestine

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Last update: Aug 31, 2015