Variant report

Variant	rs72734896
Chromosome Location	chr15:50404433-50404434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50402920..50404680-chr15:50406711..50408819,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10519258	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11070749	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11853146	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4476127	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56123457	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56757311	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72734895	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041683	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50399200-50407200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr15:50399800-50407800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:50401000-50404600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:50401400-50404800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:50401400-50405000	Weak transcription	Spleen	Spleen
6	chr15:50402200-50405000	Weak transcription	Liver	Liver
7	chr15:50402200-50406400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:50402600-50404800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:50402600-50405800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50402600-50407800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr15:50403200-50404600	Enhancers	Fetal Thymus	thymus
12	chr15:50403400-50404600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:50403400-50409000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
14	chr15:50403600-50409000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:50403800-50405000	Enhancers	K562	blood
16	chr15:50403800-50405600	Active TSS	Brain Hippocampus Middle	brain
17	chr15:50403800-50411200	Weak transcription	Thymus	Thymus
18	chr15:50404000-50404600	Weak transcription	Primary B cells from cord blood	blood
19	chr15:50404000-50404600	Enhancers	Primary hematopoietic stem cells	blood
20	chr15:50404000-50405600	Active TSS	Fetal Muscle Leg	muscle
21	chr15:50404400-50405400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
22	chr15:50404400-50405600	Active TSS	Adipose Nuclei	Adipose
23	chr15:50404400-50405600	Active TSS	Placenta	Placenta
24	chr15:50404400-50406800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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