Variant report

Variant	rs72735324
Chromosome Location	chr9:101525489-101525490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101525358..101528141-chr9:101554411..101556510,2	K562	blood:
2	chr9:101524047..101525781-chr9:101528494..101530185,2	K562	blood:
3	chr9:101523511..101525815-chr9:101533805..101535454,2	MCF-7	breast:
4	chr9:101525437..101530205-chr9:101533876..101536936,4	MCF-7	breast:
5	chr9:101525116..101528119-chr9:101542195..101544666,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10739690	0.82[EUR][1000 genomes]
rs10760475	0.83[EUR][1000 genomes]
rs10760479	0.82[EUR][1000 genomes]
rs10819266	0.84[EUR][1000 genomes]
rs10987747	0.98[ASN][1000 genomes]
rs10987771	0.96[ASN][1000 genomes]
rs10987794	0.97[ASN][1000 genomes]
rs12056975	0.98[ASN][1000 genomes]
rs12057064	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12380570	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543506	0.98[ASN][1000 genomes]
rs168083	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs173066	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs186809	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2146255	0.98[ASN][1000 genomes]
rs337569	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs337572	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs337577	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs337578	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs337581	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs337591	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33998698	0.98[ASN][1000 genomes]
rs3889747	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs404680	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs420158	0.90[ASN][1000 genomes]
rs422531	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450231	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4742737	0.82[EUR][1000 genomes]
rs4742738	0.83[EUR][1000 genomes]
rs4742741	0.84[EUR][1000 genomes]
rs532824	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs554730	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs580809	1.00[EUR][1000 genomes]
rs60698775	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478839	0.83[EUR][1000 genomes]
rs7028766	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035107	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7035722	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735326	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469116	0.85[EUR][1000 genomes]
rs7862858	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7865233	0.84[EUR][1000 genomes]
rs9919074	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101494000-101532600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:101494000-101535200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:101494400-101553000	Weak transcription	Fetal Heart	heart
4	chr9:101496600-101549400	Weak transcription	Small Intestine	intestine
5	chr9:101498800-101529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:101499200-101529800	Weak transcription	Placenta	Placenta
7	chr9:101503000-101537400	Weak transcription	HUVEC	blood vessel
8	chr9:101506200-101527000	Weak transcription	NHDF-Ad	bronchial
9	chr9:101506600-101529200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:101506800-101553400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:101507400-101533200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:101508000-101532800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:101508600-101557400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:101510000-101534600	Weak transcription	NHLF	lung
15	chr9:101514400-101553400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:101514800-101533800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:101515200-101530000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:101515200-101530000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:101516600-101529600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:101516800-101527600	Weak transcription	Pancreas	Pancrea
21	chr9:101517600-101537400	Weak transcription	NH-A	brain
22	chr9:101517800-101529400	Weak transcription	Brain Germinal Matrix	brain
23	chr9:101517800-101529800	Weak transcription	Colonic Mucosa	Colon
24	chr9:101518200-101528800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:101518200-101533400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:101518200-101537400	Weak transcription	Hela-S3	cervix
27	chr9:101518400-101529800	Weak transcription	Spleen	Spleen
28	chr9:101518600-101527400	Weak transcription	K562	blood
29	chr9:101518600-101529200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:101518600-101531600	Weak transcription	HSMMtube	muscle
31	chr9:101518600-101534000	Weak transcription	Osteobl	bone
32	chr9:101518800-101526600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr9:101518800-101527400	Weak transcription	Ovary	ovary
34	chr9:101518800-101527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:101518800-101527600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:101518800-101527600	Weak transcription	Aorta	Aorta
37	chr9:101518800-101527600	Weak transcription	Lung	lung
38	chr9:101518800-101527800	Weak transcription	Brain Angular Gyrus	brain
39	chr9:101518800-101527800	Weak transcription	Brain Anterior Caudate	brain
40	chr9:101518800-101529200	Weak transcription	Gastric	stomach
41	chr9:101518800-101529400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:101518800-101529600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:101518800-101529800	Weak transcription	Thymus	Thymus
44	chr9:101518800-101531400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:101518800-101531800	Weak transcription	Liver	Liver
46	chr9:101518800-101557200	Weak transcription	Psoas Muscle	Psoas
47	chr9:101519000-101527200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:101519000-101527200	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:101519000-101527600	Weak transcription	Esophagus	oesophagus
50	chr9:101519000-101527600	Weak transcription	Fetal Intestine Small	intestine

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