Variant report

Variant	rs72736364
Chromosome Location	chr4:151565284-151565285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151564839..151566402-chr4:151571369..151573122,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55730642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55768818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56361792	1.00[EUR][1000 genomes]
rs72719606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736333	1.00[EUR][1000 genomes]
rs72736348	1.00[EUR][1000 genomes]
rs72736352	1.00[EUR][1000 genomes]
rs72736355	1.00[EUR][1000 genomes]
rs72736357	1.00[EUR][1000 genomes]
rs72736360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72736402	1.00[EUR][1000 genomes]
rs72738306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72738360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv880261	chr4:151521933-151588483	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151533400-151596200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:151554800-151585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:151555800-151585600	Weak transcription	Primary B cells from cord blood	blood
5	chr4:151558200-151569000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:151558600-151574200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:151559200-151577000	Weak transcription	Primary T cells from cord blood	blood
8	chr4:151559400-151578200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:151565200-151565600	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links