Variant report
| Variant | rs72737627 |
|---|---|
| Chromosome Location | chr15:60152144-60152145 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000140299 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1837069 | 0.93[ASN][1000 genomes] |
| rs1837070 | 0.93[ASN][1000 genomes] |
| rs1837071 | 0.93[ASN][1000 genomes] |
| rs2083062 | 0.92[ASN][1000 genomes] |
| rs2960807 | 0.82[ASN][1000 genomes] |
| rs60731795 | 0.95[ASN][1000 genomes] |
| rs6494149 | 0.93[ASN][1000 genomes] |
| rs6494150 | 0.91[ASN][1000 genomes] |
| rs68162506 | 0.94[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72737630 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
