Variant report

Variant	rs72738292
Chromosome Location	chr9:110107272-110107273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110106380..110109788-chr9:110111716..110114487,3	MCF-7	breast:
2	chr9:110102299..110105687-chr9:110106035..110108571,3	MCF-7	breast:
3	chr9:110044838..110048328-chr9:110105313..110107824,3	K562	blood:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10978768	1.00[AFR][1000 genomes]
rs12551936	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1042965	chr9:110100745-110126661	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110097000-110107600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:110097200-110113800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:110099400-110107600	Weak transcription	Adipose Nuclei	Adipose
4	chr9:110100600-110112800	Weak transcription	Esophagus	oesophagus
5	chr9:110101000-110107800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:110101400-110107800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:110101400-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:110101600-110107400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:110101600-110107400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:110101600-110107600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:110101600-110108600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:110101600-110111200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:110101800-110107600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:110102000-110107600	Weak transcription	Osteobl	bone
15	chr9:110102000-110107800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:110103400-110110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:110103400-110111200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:110103600-110107400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:110103600-110107400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:110103600-110107600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr9:110103600-110107600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:110103600-110107800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:110103600-110107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:110103600-110107800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:110103600-110107800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:110103600-110113600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:110103600-110113800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:110103600-110114000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:110103800-110107600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:110103800-110107800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:110103800-110108000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:110103800-110110000	Weak transcription	Pancreas	Pancrea
33	chr9:110103800-110111200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:110105200-110109400	Weak transcription	HSMMtube	muscle
35	chr9:110105400-110107600	Weak transcription	NHDF-Ad	bronchial
36	chr9:110105400-110110000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:110105600-110113600	Weak transcription	HMEC	breast
38	chr9:110106200-110111400	Weak transcription	NHLF	lung
39	chr9:110106200-110114000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:110106600-110107400	Strong transcription	HSMM	muscle
41	chr9:110106800-110108000	Enhancers	Fetal Thymus	thymus
42	chr9:110107000-110108000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr9:110107000-110108000	Enhancers	Thymus	Thymus
44	chr9:110107200-110107400	Enhancers	Fetal Kidney	kidney
45	chr9:110107200-110107600	Enhancers	H1 Cell Line	embryonic stem cell
46	chr9:110107200-110107600	Weak transcription	Placenta	Placenta
47	chr9:110107200-110108000	Enhancers	Fetal Muscle Leg	muscle
48	chr9:110107200-110108000	Enhancers	Ovary	ovary
49	chr9:110107200-110108000	Enhancers	Dnd41	blood
50	chr9:110107200-110108200	Enhancers	Primary T cells from cord blood	blood

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