Variant report

Variant	rs72738715
Chromosome Location	chr15:78732010-78732011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78722992..78724695-chr15:78731841..78733511,2	K562	blood:
2	chr15:78587653..78594388-chr15:78727556..78733158,9	MCF-7	breast:
3	chr15:78731552..78733950-chr15:78743733..78745911,2	MCF-7	breast:
4	chr15:78730985..78732538-chr15:78840858..78843812,2	K562	blood:
5	chr15:78730901..78732444-chr7:139043987..139045989,2	MCF-7	breast:
6	chr15:78731227..78733467-chr3:64216080..64218992,2	MCF-7	breast:
7	chr15:78590258..78594216-chr15:78729143..78732539,8	K562	blood:
8	chr15:78730825..78732581-chr15:78754139..78756670,3	K562	blood:
9	chr15:78728558..78732848-chr15:78754139..78757790,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140395	Chromatin interaction
ENSG00000146963	Chromatin interaction
ENSG00000273391	Chromatin interaction
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11634990	0.80[EUR][1000 genomes]
rs16969874	0.80[EUR][1000 genomes]
rs16969883	0.80[EUR][1000 genomes]
rs2869048	0.80[EUR][1000 genomes]
rs3817092	0.80[EUR][1000 genomes]
rs57839482	0.80[EUR][1000 genomes]
rs61299530	0.80[EUR][1000 genomes]
rs72738729	0.80[EUR][1000 genomes]
rs8036042	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72738715	IREB2	cis	Whole Blood	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78729600-78732200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:78729600-78732200	Active TSS	H1 Cell Line	embryonic stem cell
3	chr15:78729600-78732200	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr15:78730000-78732200	Active TSS	NHDF-Ad	bronchial
5	chr15:78731000-78732200	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr15:78731400-78732200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:78731400-78732200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr15:78731400-78732200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:78731400-78732200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:78731400-78732200	Flanking Active TSS	Fetal Kidney	kidney
11	chr15:78731400-78732200	Flanking Active TSS	Hela-S3	cervix
12	chr15:78731400-78732200	Flanking Active TSS	HUVEC	blood vessel
13	chr15:78731400-78734200	Weak transcription	Gastric	stomach
14	chr15:78731400-78734400	Weak transcription	Spleen	Spleen
15	chr15:78731400-78745400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:78731600-78732200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:78731600-78732200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:78731600-78732200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr15:78731600-78732200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr15:78731600-78732200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:78731600-78732200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr15:78731600-78732200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:78731600-78732200	Enhancers	Brain Substantia Nigra	brain
24	chr15:78731600-78732200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr15:78731600-78732200	Weak transcription	Placenta	Placenta
26	chr15:78731600-78732200	Flanking Active TSS	Dnd41	blood
27	chr15:78731600-78732400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr15:78731600-78732400	Weak transcription	Left Ventricle	heart
29	chr15:78731600-78732400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr15:78731600-78732600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:78731600-78732600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:78731600-78732600	Enhancers	Brain Cingulate Gyrus	brain
33	chr15:78731600-78732800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:78731600-78732800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:78731600-78732800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:78731600-78732800	Weak transcription	Lung	lung
37	chr15:78731600-78732800	Weak transcription	Pancreas	Pancrea
38	chr15:78731600-78733000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:78731600-78733000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:78731600-78733000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:78731600-78734400	Weak transcription	Ovary	ovary
42	chr15:78731600-78734400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:78731600-78736800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:78731600-78740600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:78731600-78742800	Weak transcription	Esophagus	oesophagus
46	chr15:78731600-78742800	Weak transcription	Right Ventricle	heart
47	chr15:78731600-78756400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:78731600-78760200	Weak transcription	Aorta	Aorta
49	chr15:78731800-78732200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:78731800-78732200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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