Variant report

Variant	rs72740902
Chromosome Location	chr9:85814250-85814251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12682758	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62560410	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62560416	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62560450	1.00[AFR][1000 genomes]
rs72743011	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85812600-85815000	Enhancers	Fetal Stomach	stomach
2	chr9:85813400-85814400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:85813400-85814600	Enhancers	Fetal Brain Male	brain
4	chr9:85813600-85814400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:85813600-85815800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:85813800-85814800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:85813800-85816000	Weak transcription	Brain Germinal Matrix	brain
8	chr9:85814000-85815000	Enhancers	Fetal Brain Female	brain
9	chr9:85814200-85814800	Enhancers	Brain Angular Gyrus	brain
10	chr9:85814200-85815200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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