Variant report

Variant	rs72741506
Chromosome Location	chr15:57819610-57819611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57632756..57633581-chr15:57818988..57820292,4	MCF-7	breast:
2	chr15:57631137..57633998-chr15:57818191..57820623,2	K562	blood:
3	chr15:57636178..57637065-chr15:57819415..57820032,2	MCF-7	breast:
4	chr15:57438759..57439994-chr15:57819455..57820425,3	K562	blood:
5	chr15:57817814..57819834-chr15:57824294..57826002,2	K562	blood:
6	chr15:57632542..57633554-chr15:57819095..57820390,12	K562	blood:
7	chr15:57632602..57633486-chr15:57819385..57820825,7	MCF-7	breast:
8	chr15:57637629..57639520-chr15:57818149..57819741,2	MCF-7	breast:

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17820359	1.00[AFR][1000 genomes]
rs2922228	0.81[AFR][1000 genomes]
rs34644641	1.00[AFR][1000 genomes]
rs71478628	0.89[AFR][1000 genomes]
rs7167023	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:57802800-57822600	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
5	chr15:57811000-57827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:57816800-57820800	Weak transcription	Gastric	stomach
7	chr15:57817000-57820800	Weak transcription	HepG2	liver
8	chr15:57817000-57826600	Weak transcription	Lung	lung
9	chr15:57817200-57819800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:57817200-57819800	Enhancers	HUVEC	blood vessel
11	chr15:57817200-57820600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:57817200-57820800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:57817200-57821000	Weak transcription	Placenta	Placenta
14	chr15:57817200-57827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:57817800-57820200	Enhancers	Fetal Heart	heart
16	chr15:57818000-57819800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:57818000-57819800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:57818000-57820000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:57818200-57820600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:57818400-57820000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:57818600-57819800	Enhancers	NH-A	brain
22	chr15:57818800-57819800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:57818800-57819800	Enhancers	Fetal Intestine Large	intestine
24	chr15:57819000-57819800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr15:57819000-57819800	Enhancers	Left Ventricle	heart
26	chr15:57819000-57820200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr15:57819200-57819800	Enhancers	A549	lung
28	chr15:57819200-57819800	Enhancers	NHDF-Ad	bronchial
29	chr15:57819200-57841000	Weak transcription	Esophagus	oesophagus
30	chr15:57819400-57819800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr15:57819400-57819800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr15:57819400-57819800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:57819400-57819800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:57819400-57819800	Enhancers	Primary B cells from peripheral blood	blood
35	chr15:57819400-57819800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:57819400-57819800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr15:57819400-57819800	Enhancers	Brain Cingulate Gyrus	brain
38	chr15:57819400-57819800	Enhancers	Fetal Kidney	kidney
39	chr15:57819400-57819800	Enhancers	Fetal Lung	lung
40	chr15:57819400-57819800	Enhancers	Ovary	ovary
41	chr15:57819400-57819800	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr15:57819400-57819800	Enhancers	Right Atrium	heart
43	chr15:57819400-57819800	Enhancers	HSMM	muscle
44	chr15:57819400-57819800	Enhancers	HSMMtube	muscle
45	chr15:57819400-57820000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:57819400-57820000	Enhancers	Fetal Muscle Leg	muscle
47	chr15:57819400-57820000	Enhancers	Fetal Stomach	stomach
48	chr15:57819400-57820200	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr15:57819400-57820200	Enhancers	Brain Anterior Caudate	brain
50	chr15:57819400-57820200	Enhancers	Brain Inferior Temporal Lobe	brain

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