Variant report

Variant	rs72742520
Chromosome Location	chr9:107907364-107907365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107905381..107907713-chr9:107908586..107910737,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55659643	1.00[AMR][1000 genomes]
rs72742522	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72742551	1.00[AMR][1000 genomes]
rs72744222	1.00[AMR][1000 genomes]
rs72744226	1.00[AMR][1000 genomes]
rs72744228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107893600-107907400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:107901000-107908800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:107901200-107911200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:107901600-107907400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:107902000-107908600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:107902000-107921800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:107902800-107907400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:107903200-107908800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:107903200-107913400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:107903400-107908800	Weak transcription	Brain Substantia Nigra	brain
11	chr9:107904000-107909000	Weak transcription	Esophagus	oesophagus
12	chr9:107904200-107908800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:107904200-107911000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:107904200-107911200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:107904200-107912400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:107904400-107908600	Weak transcription	Brain Hippocampus Middle	brain
17	chr9:107904400-107908800	Weak transcription	Fetal Brain Male	brain
18	chr9:107904400-107913000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr9:107904400-107913200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:107904400-107919600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:107904600-107908800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:107904600-107909000	Weak transcription	Adipose Nuclei	Adipose
23	chr9:107904600-107913000	Weak transcription	Fetal Kidney	kidney
24	chr9:107904800-107908800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:107905000-107908600	Weak transcription	Fetal Stomach	stomach
26	chr9:107905000-107913800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:107905400-107913400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:107905600-107913400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:107905600-107917400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:107906000-107907800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr9:107906000-107909400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr9:107906200-107907600	Weak transcription	Fetal Thymus	thymus
33	chr9:107906200-107908600	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:107907000-107907600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:107907000-107907800	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr9:107907000-107908000	Enhancers	Colon Smooth Muscle	Colon
37	chr9:107907200-107907400	Enhancers	NHDF-Ad	bronchial
38	chr9:107907200-107907600	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr9:107907200-107907800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr9:107907200-107907800	Enhancers	Dnd41	blood
41	chr9:107907200-107908000	Enhancers	Primary T cells from cord blood	blood

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