Variant report

Variant	rs727426
Chromosome Location	chr4:151142215-151142216
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151128805..151130494-chr4:151141671..151144389,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11941843	0.81[ASN][1000 genomes]
rs13125688	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1531335	0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6535725	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs727426	LRBA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151114200-151154200	Weak transcription	Aorta	Aorta
2	chr4:151130600-151156000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:151132600-151143200	Weak transcription	Fetal Stomach	stomach
4	chr4:151132800-151150400	Weak transcription	Pancreas	Pancrea
5	chr4:151133200-151145600	Weak transcription	HSMMtube	muscle
6	chr4:151133200-151150400	Weak transcription	Right Ventricle	heart
7	chr4:151133400-151150400	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:151137000-151146000	Weak transcription	Left Ventricle	heart
9	chr4:151138400-151149200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:151138600-151145600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:151138600-151146000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:151138600-151150400	Weak transcription	Ovary	ovary
13	chr4:151138800-151146000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:151138800-151146400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:151138800-151151600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:151138800-151151800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:151138800-151153200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:151138800-151153400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:151138800-151153400	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:151138800-151169800	Weak transcription	Spleen	Spleen
21	chr4:151139000-151145800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:151139000-151153600	Weak transcription	Adipose Nuclei	Adipose
23	chr4:151139200-151150400	Weak transcription	Fetal Brain Female	brain
24	chr4:151139600-151142800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:151139600-151142800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:151139600-151145800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr4:151139600-151150000	Weak transcription	Fetal Brain Male	brain
28	chr4:151139600-151177400	Weak transcription	Brain Substantia Nigra	brain
29	chr4:151139600-151181000	Weak transcription	Brain Angular Gyrus	brain
30	chr4:151139800-151145600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:151139800-151150400	Weak transcription	Fetal Lung	lung
32	chr4:151139800-151153200	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:151139800-151153600	Weak transcription	Brain Anterior Caudate	brain
34	chr4:151140000-151144200	Weak transcription	Fetal Heart	heart
35	chr4:151140000-151145600	Weak transcription	Brain Germinal Matrix	brain
36	chr4:151140000-151175000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:151141200-151145000	Weak transcription	Osteobl	bone
38	chr4:151141200-151145400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:151141400-151143600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:151141400-151145600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:151141400-151145600	Weak transcription	NH-A	brain
42	chr4:151141400-151145600	Weak transcription	NHDF-Ad	bronchial
43	chr4:151141400-151153800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr4:151141600-151142800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:151141600-151142800	Strong transcription	HSMM	muscle
46	chr4:151141600-151145200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:151141600-151145800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:151141600-151145800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:151141800-151142600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:151141800-151142800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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