Variant report

Variant	rs72743404
Chromosome Location	chr9:95945081-95945082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr9:95944929-95945328	HepG2	liver:	n/a	n/a
2	FOXA1	chr9:95944990-95945393	HepG2	liver:	n/a	n/a
3	FOXA1	chr9:95944947-95945317	HepG2	liver:	n/a	n/a
4	GATA3	chr9:95944888-95945213	T-47D	breast:	n/a	chr9:95945098-95945109
5	FOXA1	chr9:95945028-95945257	T-47D	breast:	n/a	n/a
6	HDAC2	chr9:95944996-95945378	HepG2	liver:	n/a	n/a
7	MAX	chr9:95944947-95945105	HepG2	liver:	n/a	n/a
8	ARID3A	chr9:95944981-95945146	HepG2	liver:	n/a	n/a
9	FOXA1	chr9:95944918-95945424	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:95945010..95947116-chr9:96042384..96044882,2	MCF-7	breast:
2	chr9:95927482..95929226-chr9:95942592..95945216,3	MCF-7	breast:
3	chr9:95943290..95945540-chr9:95952949..95954790,2	K562	blood:

Variant related genes	Relation type
WNK2	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11790340	0.91[ASN][1000 genomes]
rs11790795	0.91[ASN][1000 genomes]
rs11791377	0.91[ASN][1000 genomes]
rs11791390	0.91[ASN][1000 genomes]
rs11794044	0.97[ASN][1000 genomes]
rs1936399	0.91[ASN][1000 genomes]
rs34020099	0.91[ASN][1000 genomes]
rs34739795	0.97[ASN][1000 genomes]
rs35305079	0.97[ASN][1000 genomes]
rs35438843	0.97[ASN][1000 genomes]
rs35712744	0.97[ASN][1000 genomes]
rs36101213	0.91[ASN][1000 genomes]
rs61275172	0.91[ASN][1000 genomes]
rs7031721	0.97[ASN][1000 genomes]
rs7043649	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95943000-95945600	Weak transcription	Esophagus	oesophagus
2	chr9:95943000-95945600	Enhancers	Right Ventricle	heart
3	chr9:95943200-95945200	Enhancers	Psoas Muscle	Psoas
4	chr9:95943200-95945400	Weak transcription	Spleen	Spleen
5	chr9:95944000-95945800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr9:95944200-95945200	Enhancers	Duodenum Mucosa	Duodenum
7	chr9:95944200-95945800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:95944200-95946000	Enhancers	Left Ventricle	heart
9	chr9:95944200-95946000	Enhancers	Pancreas	Pancrea
10	chr9:95944400-95945800	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr9:95944400-95945800	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:95944400-95946200	Enhancers	Gastric	stomach
13	chr9:95944600-95945600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:95944600-95945600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:95944800-95945600	Bivalent Enhancer	HepG2	liver
16	chr9:95944800-95945800	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr9:95944800-95945800	Bivalent Enhancer	Fetal Stomach	stomach
18	chr9:95944800-95946000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr9:95945000-95945400	Flanking Active TSS	Fetal Heart	heart
20	chr9:95945000-95945800	Enhancers	Brain Germinal Matrix	brain
21	chr9:95945000-95945800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
22	chr9:95945000-95945800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr9:95945000-95946000	Weak transcription	Right Atrium	heart

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