Variant report

Variant	rs72743441
Chromosome Location	chr1:210362989-210362990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12134437	0.86[ASN][1000 genomes]
rs1361182	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1361183	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933474	0.93[ASN][1000 genomes]
rs2485901	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2485903	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2494167	0.86[ASN][1000 genomes]
rs2494174	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2494177	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34573048	0.87[ASN][1000 genomes]
rs815357	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210361400-210363200	Enhancers	Placenta	Placenta
2	chr1:210362400-210363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:210362800-210363200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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