Variant report
Variant | rs72743455 |
---|---|
Chromosome Location | chr1:210384311-210384312 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:210382606..210385397-chr1:210405374..210407768,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000203706 | Chromatin interaction |
ENSG00000082497 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11119439 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4844515 | 0.84[ASN][1000 genomes] |
rs4844973 | 0.88[ASN][1000 genomes] |
rs590152 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs591594 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
2 | nsv526050 | chr1:210381257-210386585 | Active TSS Enhancers Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |