Variant report

Variant	rs72743922
Chromosome Location	chr9:98804309-98804310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98800086..98802107-chr9:98802951..98805065,2	K562	blood:
2	chr9:98800966..98802558-chr9:98803277..98805259,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11788050	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743472	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4743479	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72743922	LINC00476	cis	Whole Blood	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98790800-98810800	Weak transcription	Brain Angular Gyrus	brain
2	chr9:98793600-98804600	Weak transcription	Fetal Heart	heart
3	chr9:98799200-98804600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:98801400-98809600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:98801600-98805400	Enhancers	Fetal Lung	lung
6	chr9:98801600-98809800	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:98801800-98805400	Enhancers	Fetal Stomach	stomach
8	chr9:98801800-98809800	Weak transcription	Brain Substantia Nigra	brain
9	chr9:98801800-98810200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:98802000-98804800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:98802400-98806200	Weak transcription	Spleen	Spleen
12	chr9:98803000-98804400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:98803000-98804400	Bivalent Enhancer	Stomach Mucosa	stomach
14	chr9:98803000-98808600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:98803000-98810200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:98803200-98805200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:98803400-98807200	Enhancers	HSMMtube	muscle
18	chr9:98803600-98804400	Weak transcription	Fetal Intestine Small	intestine
19	chr9:98803600-98804400	Weak transcription	Gastric	stomach
20	chr9:98803600-98804600	Weak transcription	Small Intestine	intestine
21	chr9:98803600-98809000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:98803600-98809000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:98803800-98810200	Weak transcription	Ovary	ovary
24	chr9:98804200-98804600	Weak transcription	Pancreas	Pancrea

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