Variant report

Variant	rs72743992
Chromosome Location	chr1:213078885-213078886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17019780	0.91[AMR][1000 genomes]
rs56189056	0.84[EUR][1000 genomes]
rs61695371	0.81[AMR][1000 genomes]
rs72743911	0.81[AMR][1000 genomes]
rs72743925	0.81[AMR][1000 genomes]
rs72743933	0.82[AMR][1000 genomes]
rs72743935	0.91[AMR][1000 genomes]
rs72743938	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1007129	chr1:213037244-213083261	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72743992	FLVCR1-AS1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213073200-213079200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr1:213073200-213079400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr1:213073200-213079800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr1:213073600-213079200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr1:213073800-213079200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:213073800-213079200	Weak transcription	Right Atrium	heart
7	chr1:213073800-213089000	Weak transcription	Pancreas	Pancrea
8	chr1:213075200-213079000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr1:213076800-213079200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:213076800-213083600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:213078000-213080000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr1:213078600-213079400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr1:213078600-213079800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:213078800-213079600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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