Variant report

Variant	rs72744524
Chromosome Location	chr5:36106043-36106044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2642732	1.00[AMR][1000 genomes]
rs72744567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36090800-36107000	Weak transcription	HSMMtube	muscle
2	chr5:36092800-36116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:36093600-36107600	Weak transcription	Psoas Muscle	Psoas
4	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
5	chr5:36098200-36106800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:36098600-36106200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:36098600-36106800	Weak transcription	Left Ventricle	heart
8	chr5:36098600-36107400	Weak transcription	Right Ventricle	heart
9	chr5:36098600-36107800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:36098800-36113200	Weak transcription	Fetal Stomach	stomach
11	chr5:36099000-36116800	Weak transcription	Fetal Intestine Small	intestine
12	chr5:36100200-36107800	Weak transcription	Aorta	Aorta
13	chr5:36100200-36127600	Weak transcription	Pancreas	Pancrea
14	chr5:36100200-36139400	Weak transcription	Gastric	stomach
15	chr5:36100600-36106800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:36100800-36107600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:36100800-36127600	Weak transcription	Spleen	Spleen
18	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
19	chr5:36101400-36107600	Weak transcription	Small Intestine	intestine
20	chr5:36102000-36118400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr5:36102200-36108600	Strong transcription	Adipose Nuclei	Adipose
22	chr5:36102200-36118400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr5:36102400-36107000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:36102400-36110400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:36102400-36111800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr5:36102600-36107000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:36102600-36107000	Weak transcription	Ovary	ovary
28	chr5:36102600-36107400	Weak transcription	Esophagus	oesophagus
29	chr5:36102600-36107600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr5:36102600-36129200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:36102600-36141400	Weak transcription	Hela-S3	cervix
32	chr5:36102800-36106800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr5:36102800-36107600	Weak transcription	GM12878-XiMat	blood
34	chr5:36103000-36107000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:36103000-36107200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:36103000-36107400	Weak transcription	Colon Smooth Muscle	Colon
37	chr5:36103000-36114400	Strong transcription	HSMM	muscle
38	chr5:36103000-36128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:36103200-36107400	Weak transcription	Fetal Lung	lung
40	chr5:36103200-36107600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr5:36103200-36107800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:36103200-36108800	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr5:36103400-36108400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:36103400-36108600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:36103400-36109200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:36103400-36111200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:36103600-36106200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr5:36103600-36109600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:36103600-36118400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:36103600-36147200	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links