Variant report

Variant	rs72744593
Chromosome Location	chr5:36276583-36276584
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11737918	0.81[ASN][1000 genomes]
rs11739323	0.80[ASN][1000 genomes]
rs11745827	0.80[ASN][1000 genomes]
rs1363840	0.82[ASN][1000 genomes]
rs2362977	0.82[ASN][1000 genomes]
rs2362979	0.82[ASN][1000 genomes]
rs28610396	0.82[ASN][1000 genomes]
rs35161198	0.80[ASN][1000 genomes]
rs3789758	0.80[ASN][1000 genomes]
rs6879127	0.80[ASN][1000 genomes]
rs6884331	0.80[ASN][1000 genomes]
rs6890702	0.84[ASN][1000 genomes]
rs72744587	0.84[ASN][1000 genomes]
rs72744600	0.80[EUR][1000 genomes]
rs990057	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36261600-36277000	Weak transcription	Pancreas	Pancrea
2	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
4	chr5:36271200-36276800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
6	chr5:36273600-36279800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:36274800-36276800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:36274800-36276800	Weak transcription	Adipose Nuclei	Adipose
9	chr5:36274800-36276800	Weak transcription	Aorta	Aorta
10	chr5:36274800-36282800	Weak transcription	Brain Anterior Caudate	brain
11	chr5:36275000-36276600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:36275200-36281600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:36275400-36277000	Weak transcription	Liver	Liver
14	chr5:36276400-36278000	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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