Variant report

Variant	rs72746048
Chromosome Location	chr9:108322535-108322536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr9:108322527-108322600	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr9:108322382-108322567	ProgFib	skin:	n/a	n/a
3	GATA3	chr9:108322171-108322555	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000228317	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41277797	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72744265	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72746056	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72746070	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049133	chr9:108292302-108356068	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108321000-108324400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:108321000-108324400	Weak transcription	Esophagus	oesophagus
3	chr9:108321200-108323000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:108321200-108323200	Weak transcription	Ovary	ovary
5	chr9:108321200-108325600	Weak transcription	Left Ventricle	heart
6	chr9:108321200-108335600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:108321400-108323000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:108321400-108323000	Weak transcription	Fetal Intestine Small	intestine
9	chr9:108321400-108323400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:108321400-108323800	Weak transcription	Fetal Heart	heart
11	chr9:108321400-108324000	Weak transcription	Primary B cells from cord blood	blood
12	chr9:108321400-108324400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:108321400-108324600	Weak transcription	Fetal Kidney	kidney
14	chr9:108321400-108325000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:108321600-108322800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:108321600-108323000	Weak transcription	Fetal Stomach	stomach
17	chr9:108321600-108323400	Weak transcription	Primary T cells from cord blood	blood
18	chr9:108321600-108323400	Weak transcription	Liver	Liver
19	chr9:108321600-108323800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:108321600-108323800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:108321600-108323800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:108321600-108323800	Weak transcription	Fetal Lung	lung
23	chr9:108321600-108324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr9:108321600-108324000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:108321600-108324000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:108321600-108324200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:108321600-108324200	Weak transcription	A549	lung
28	chr9:108321600-108324400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:108321600-108324400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:108321600-108324400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:108321600-108324400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:108321600-108324400	Weak transcription	Fetal Brain Male	brain
33	chr9:108321600-108324400	Weak transcription	NHEK	skin
34	chr9:108321600-108324400	Weak transcription	NHLF	lung
35	chr9:108321600-108325000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:108321600-108325000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:108321600-108325200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr9:108321600-108325600	Weak transcription	Thymus	Thymus
39	chr9:108321600-108326000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:108321600-108326200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:108321600-108336000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:108321600-108336800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:108321600-108336800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr9:108321600-108338000	Weak transcription	Colon Smooth Muscle	Colon
45	chr9:108321600-108353600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr9:108321600-108354000	Weak transcription	Right Ventricle	heart
47	chr9:108321600-108360200	Weak transcription	HSMM	muscle
48	chr9:108321600-108397200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:108321800-108322600	Enhancers	Dnd41	blood
50	chr9:108321800-108324400	Weak transcription	Primary T cells fromperipheralblood	blood

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