Variant report

Variant	rs72749893
Chromosome Location	chr15:93068836-93068837
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93067708..93069820-chr15:93182760..93184278,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16946993	0.85[EUR][1000 genomes]
rs16947053	0.93[ASN][1000 genomes]
rs2168355	0.93[ASN][1000 genomes]
rs58979278	0.85[EUR][1000 genomes]
rs7176427	0.93[ASN][1000 genomes]
rs72749879	0.85[EUR][1000 genomes]
rs72749882	0.85[EUR][1000 genomes]
rs72749889	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72751776	0.80[ASN][1000 genomes]
rs72751782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv2751542	chr15:93053681-93091815	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93065200-93070600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:93065200-93070600	Weak transcription	Right Ventricle	heart
3	chr15:93065600-93070600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:93066400-93069800	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:93066800-93069000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:93066800-93069400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:93067200-93069000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:93067400-93069000	Enhancers	Psoas Muscle	Psoas
9	chr15:93067400-93069200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:93067400-93069200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:93067600-93069000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:93067600-93069200	Enhancers	Fetal Muscle Leg	muscle
13	chr15:93067600-93069200	Enhancers	Fetal Thymus	thymus
14	chr15:93067800-93069000	Enhancers	Brain Germinal Matrix	brain
15	chr15:93067800-93069400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:93067800-93070600	Weak transcription	Left Ventricle	heart
17	chr15:93067800-93072400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:93068000-93070400	Weak transcription	HSMMtube	muscle
19	chr15:93068000-93070600	Weak transcription	HSMM	muscle
20	chr15:93068000-93070800	Weak transcription	Gastric	stomach
21	chr15:93068200-93069000	Enhancers	Fetal Lung	lung
22	chr15:93068200-93069000	Enhancers	Fetal Muscle Trunk	muscle
23	chr15:93068800-93069000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:93068800-93069000	Enhancers	Ovary	ovary
25	chr15:93068800-93069000	Enhancers	Pancreas	Pancrea

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