Variant report

Variant	rs72749919
Chromosome Location	chr9:116570142-116570143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116569447..116570300-chr9:117052628..117053509,2	MCF-7	breast:
2	chr9:116569406..116570272-chr9:116810108..116810697,3	MCF-7	breast:
3	chr9:116569758..116570851-chr9:116725009..116725871,4	MCF-7	breast:
4	chr9:116569351..116570307-chr9:116724834..116725972,6	K562	blood:
5	chr9:116569470..116570687-chr9:116760574..116761781,7	MCF-7	breast:
6	chr9:116569383..116570266-chr9:116795410..116796177,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1854667	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116569600-116570400	Enhancers	Liver	Liver
2	chr9:116569800-116570200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:116569800-116570200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr9:116569800-116570200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr9:116569800-116570200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:116569800-116570200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:116569800-116570200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr9:116569800-116570200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:116569800-116570200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:116569800-116570200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:116569800-116570200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:116569800-116570200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:116569800-116570200	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr9:116569800-116570200	Enhancers	Brain Cingulate Gyrus	brain
15	chr9:116569800-116570200	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr9:116569800-116570200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr9:116569800-116570200	Enhancers	Fetal Brain Female	brain
18	chr9:116569800-116570200	Enhancers	Fetal Intestine Large	intestine
19	chr9:116569800-116570200	Active TSS	Fetal Lung	lung
20	chr9:116569800-116570200	Active TSS	Gastric	stomach
21	chr9:116569800-116570200	Flanking Active TSS	Ovary	ovary
22	chr9:116569800-116570200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr9:116569800-116570200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr9:116569800-116570200	Active TSS	Rectal Smooth Muscle	rectum
25	chr9:116569800-116570200	Active TSS	HSMMtube	muscle
26	chr9:116569800-116570200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr9:116569800-116570200	Flanking Active TSS	NHEK	skin
28	chr9:116569800-116570200	Flanking Active TSS	NHLF	lung
29	chr9:116569800-116570400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr9:116569800-116570400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:116569800-116570400	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr9:116569800-116570400	Enhancers	Fetal Stomach	stomach
33	chr9:116569800-116570400	Enhancers	Lung	lung
34	chr9:116569800-116570400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr9:116569800-116570400	Flanking Active TSS	Stomach Mucosa	stomach
36	chr9:116569800-116570400	Active TSS	Stomach Smooth Muscle	stomach
37	chr9:116569800-116570400	Enhancers	HMEC	breast
38	chr9:116569800-116570400	Enhancers	NH-A	brain
39	chr9:116569800-116570600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr9:116569800-116571200	Enhancers	HSMM	muscle
41	chr9:116569800-116571400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:116569800-116571600	Enhancers	K562	blood
43	chr9:116570000-116570200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr9:116570000-116570200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:116570000-116570200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr9:116570000-116570200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:116570000-116570200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:116570000-116570200	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr9:116570000-116570200	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr9:116570000-116570200	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links