Variant report
| Variant | rs72751406 |
|---|---|
| Chromosome Location | chr9:96586413-96586414 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000263875 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs16909493 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62574039 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62574040 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62574041 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62574042 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62574045 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72749395 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72751416 | 1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72751417 | 1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72751423 | 1.00[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72751424 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72751426 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1824724 | chr9:96582360-96598551 | Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
