Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:83626440..83628426-chr15:83632184..83633804,2	MCF-7	breast:
2	chr15:83625962..83628685-chr15:83647104..83648830,2	MCF-7	breast:
3	chr15:83627050..83629570-chr15:83633980..83635663,2	MCF-7	breast:
4	chr15:83624400..83626686-chr15:83627258..83629028,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf40-2	chr15:83626882-83628060	ENSG00000245763

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12443081	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83622000-83629600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83622000-83631200	Weak transcription	Spleen	Spleen
3	chr15:83622000-83635200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:83622200-83630200	Weak transcription	Primary T cells from cord blood	blood
5	chr15:83622200-83649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83622800-83632000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:83623000-83632000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:83625600-83630200	Enhancers	Pancreas	Pancrea
9	chr15:83627000-83627800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr15:83627000-83627800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:83627000-83627800	Enhancers	HepG2	liver
12	chr15:83627000-83628200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:83627000-83628200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:83627000-83628200	Enhancers	HMEC	breast
15	chr15:83627000-83628400	Enhancers	Gastric	stomach
16	chr15:83627000-83629600	Enhancers	Liver	Liver
17	chr15:83627200-83627800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:83627200-83628200	Enhancers	Fetal Muscle Leg	muscle
19	chr15:83627200-83629000	Enhancers	Psoas Muscle	Psoas
20	chr15:83627400-83628000	Enhancers	Right Ventricle	heart
21	chr15:83627400-83628200	Enhancers	Left Ventricle	heart

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