Variant report

Variant	rs72755942
Chromosome Location	chr15:83628788-83628789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1002881	0.90[EUR][1000 genomes]
rs17158132	0.84[AMR][1000 genomes]
rs72755929	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83622000-83629600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83622000-83631200	Weak transcription	Spleen	Spleen
3	chr15:83622000-83635200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:83622200-83630200	Weak transcription	Primary T cells from cord blood	blood
5	chr15:83622200-83649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83622800-83632000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:83623000-83632000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:83625600-83630200	Enhancers	Pancreas	Pancrea
9	chr15:83627000-83629600	Enhancers	Liver	Liver
10	chr15:83627200-83629000	Enhancers	Psoas Muscle	Psoas
11	chr15:83628200-83630000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:83628200-83630200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr15:83628200-83632400	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:83628400-83629600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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