Variant report
| Variant | rs72756164 |
|---|---|
| Chromosome Location | chr5:50157862-50157863 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10461602 | 0.89[EUR][1000 genomes] |
| rs12654246 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12656298 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs16877040 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs16884855 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs16884926 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs16884937 | 1.00[AFR][1000 genomes] |
| rs16885251 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4590146 | 0.84[EUR][1000 genomes] |
| rs58225490 | 0.93[EUR][1000 genomes] |
| rs72753758 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72753773 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72756138 | 0.89[EUR][1000 genomes] |
| rs72756139 | 1.00[AFR][1000 genomes] |
| rs72756140 | 1.00[AFR][1000 genomes] |
| rs72756146 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72756180 | 1.00[AFR][1000 genomes] |
| rs72756185 | 1.00[AFR][1000 genomes] |
| rs7705385 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7708414 | 0.89[EUR][1000 genomes] |
| rs965913 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462159 | chr5:49960673-50229851 | Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv598108 | chr5:49960673-50229851 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034445 | chr5:49986171-50492609 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv598116 | chr5:50064292-50318550 | Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:50155800-50160800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
